[1] |
Gruber N.The Dynamics of the Marine Nitrogen Cycle and Its Influence on Atmospheric CO2 Variations[M]. Netherlands: Springer, 2004:97-148.
|
[2] |
Arrigo K R.Marine microorganisms and global nutrient cycles[J]. Nature, 2005, 437(7 057): 349-355.
|
[3] |
Song Guodong, Liu Sumei.Advances in studies of anaerobic ammonium oxidation in the marine environment[J]. Advances in Earth Science, 2012, 27(5):529-538.
|
|
[宋国栋, 刘素美. 海洋环境中的厌氧铵氧化研究进展[J]. 地球科学进展, 2012, 27(5): 529-538.]
|
[4] |
Devol A H.Denitrification, anammox, and N2 production in marine sediments[J]. Annual Review of Marine Science, 2015, 7(1): 403-423.
|
[5] |
Tielens A G M, Rotte C, van Hellemond J J, et al. Mitochondria as we don’t know them[J]. Trends in Biochemical Sciences, 2002, 27(11): 564-572.
|
[6] |
Shapleigh J P.The Denitrifying Prokaryotes[M]. New York: Springer, 2006:769-792.
|
[7] |
Risgaard-Petersen N, Langezaal A M, Ingvardsen S, et al.Evidence for complete denitrification in a benthic foraminifer[J]. Nature, 2006, 443(7 107): 93-96.
|
[8] |
Piña-Ochoa E, Hogslund S, Geslin E, et al.Widespread occurrence of nitrate storage and denitrification among Foraminifera and Gromiida[J]. PNAS, 2010, 107(3): 1 148-1 153.
|
[9] |
Høgslund S, Revsbech N P, Cedhagen T, et al.Denitrification, nitrate turnover, and aerobic respiration by benthic foraminiferans in the oxygen minimum zone off Chile[J]. Journal of Experimental Marine Biology and Ecology, 2008, 359(2): 85-91.
|
[10] |
Bernhard J M, Casciotti K L, McIlvin M R, et al. Potential importance of physiologically diverse benthic foraminifera in sedimentary nitrate storage and respiration[J]. Journal of Geophysical Research: Biogeosciences, 2012, 117(G3):1 851-1 853.
|
[11] |
Glud R N, Thamdrup B, Stahl H, et al.Nitrogen cycling in a deep ocean margin sediment (Sagami Bay, Japan)[J]. Limnology and Oceanography, 2009, 54(3): 723-734.
|
[12] |
Kamp A, Hogslund S, Risgaard-Petersen N, et al.Nitrate storage and dissimilatory nitrate reduction by Eukaryotic Microbes[J]. Frontiers in Microbiology, 2015, 6: 1 492.
|
[13] |
Bernhard J M, Buck K R, Farmer M A, et al.The Santa Barbara Basin is a symbiosis oasis[J]. Nature, 2000, 403(6 765): 77-80.
|
[14] |
Gooday A J, Bernhard J M, Levin L A, et al.Foraminifera in the Arabian Sea oxygen minimum zone and other oxygen-deficient settings: Taxonomic composition, diversity, and relation to metazoan faunas[J]. Deep-Sea Research Part I:Topical Studies in Oceanography, 2000, 47(1/2): 25-54.
|
[15] |
Bernhard J M, SenGupta B K, Borne P F. Benthic foraminiferal proxy to estimate dysoxic bottom-water oxygen concentrations: Santa Barbara Basin, US Pacific continental margin[J]. Journal of Foraminiferal Research, 1997, 27(4): 301-310.
|
[16] |
Moodley L, Middelburg J J, Boschker H T S, et al. Bacteria and Foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus[J]. Marine Ecology Progress, 2002, 236(1): 23-29.
|
[17] |
Nomaki H, Heinz P, Nakatsuka T, et al.Species-specific ingestion of organic carbon by deep-sea benthic foraminifera and meiobenthos: In situ tracer experiments[J]. Limnology and Oceanography, 2005, 50(1): 134-146.
|
[18] |
Koho K A, Piña-Ochoa E.Benthic foraminifera: Inhabitants of low-oxygen environments[M]∥Cellular Drigin, Life in Extreme Habitats and Astrobiology.Dordrecht: Spronger,2012: 249-285.
|
[19] |
Prokopenko M G, Sigman D M, Berelson W M, et al.Denitrification in anoxic sediments supported by biological nitrate transport[J]. Geochimica et Cosmochimica Acta, 2011, 75(22): 7 180-7 199.
|
[20] |
Xu Z, Liu S, Xiang R, et al.Live benthic foraminifera in the Yellow Sea and the East China Sea: Vertical distribution, nitrate storage, and potential denitrification[J]. Marine Ecology Progress Series, 2017, 571: 65-81.
|
[21] |
Fossing H, Gallardo V A, Jorgensen B B, et al.Concentration and transport of nitrate by the mat-forming sulfur bacterium thioploca[J]. Nature, 1995, 374(6 524): 713-715.
|
[22] |
Dortch Q, Clayton J R, Thoresen S S, et al.Species differences in accumulation of nitrogen pools in phytoplankton[J]. Marine Biology, 1984, 81(3): 237-250.
|
[23] |
Kamp A, de Beer D, Nitsch J L, et al. Diatoms respire nitrate to survive dark and anoxic conditions[J]. PNAS, 2011, 108(14): 5 649-5 654.
|
[24] |
Lomas M W, Glibert P M.Comparisons of nitrate uptake, storage, and reduction in marine diatoms and flagellates[J]. Journal of Phycology, 2000, 36(5): 903-913.
|
[25] |
Fenchel T, King G M, Blackburn T H. Bacterial Biogeochemistry (Third Edition)[M]. New York: Springer, 2013.
|
[26] |
Nomaki H, Chikaraishi Y, Tsuchiya M, et al.Variation in the nitrogen isotopic composition of amino acids in benthic foraminifera: Implications for their adaptation to oxygen-depleted environments[J]. Limnology and Oceanography, 2015, 60(6): 1 906-1 916.
|
[27] |
Geslin E, Barras C, Langlet D, et al.Survival, Reproduction and Calcification of Three Benthic Foraminiferal Species in Response to Experimentally Induced Hypoxia[M]. Japan: Springer, 2014:163-193.
|
[28] |
Koho K A, Piña-Ochoa E, Geslin E, et al.Vertical migration, nitrate uptake and denitrification: Survival mechanisms of foraminifers (Globobulimina turgida) under low oxygen conditions[J]. Fems Microbiology Ecology, 2011, 75(2): 273-283.
|
[29] |
Piña-Ochoa E, Koho K A, Geslin E, et al.Survival and life strategy of the foraminiferan Globobulimina turgida through nitrate storage and denitrification[J]. Marine Ecology Progress Series, 2010, 417: 39-49.
|
[30] |
Bernhard J M, Edgcomb V P, Casciotti K L, et al.Denitrification likely catalyzed by endobionts in an allogromiid foraminifer[J]. Journal of Microbial Ecology, 2012, 6(5): 951-960.
|
[31] |
Nomaki H, Chikaraishi Y, Tsuchiya M, et al.Nitrate uptake by foraminifera and use in conjunction with endobionts under anoxic conditions[J]. Limnology and Oceanography, 2014, 59(6): 1 879-1 888.
|
[32] |
Lomstein E, Jensen M H, Sørensen J.Intracellular NH4 and NO5 pools associated with deposited phytoplankton in a marine sediment (Aarhus Bight, Denmark)[J]. Marine Ecology Progress Series, 1990, 61(1/2): 97-105.
|
[33] |
Sayama M.Presence of nitrate-accumulating sulfur bacteria and their influence on nitrogen cycling in a shallow coastal marine sediment[J]. Applied & Environmental Microbiology, 2001, 67(8): 3 481-3 487.
|
[34] |
Glock N, Schönfeld J, Eisenhauer A, et al.The role of benthic foraminifera in the benthic nitrogen cycle of the Peruvian oxygen minimum zone[J]. Biogeosciences Discussions, 2012, 9(12): 17 775-17 817.
|
[35] |
Larsen M, Thamdrup B, Shimmield T, et al.Benthic mineralization and solute exchange on a Celtic Sea sand-bank (Jones Bank)[J]. Progress in Oceanography, 2013, 117: 64-75.
|
[36] |
Glock N, Schonfeld J, Eisenhauer A, et al.The role of benthic foraminifera in the benthic nitrogen cycle of the Peruvian oxygen minimum zone[J]. Biogeosciences, 2013, 10(7): 4 767-4 783.
|
[37] |
Risgaard-Petersen N, Nielsen L P, Rysgaard S, et al.Application of the isotope pairing technique in sediments where anammox and denitrification coexist[J]. Limnology and Oceanography-Methods, 2003,(1): 63-73.
|
[38] |
Corliss B H, Emerson S.Distribution of rose-bengal stained deep-sea benthic foraminifera from the Nova Scotian Continental-Margin and Gulf of maine[J]. Deep-Sea Research Part I:Oceanographic Research Papers, 1990, 37(3): 381-400.
|
[39] |
Rathburn A E, Corliss B H.The ecology of living (Stained) deep-sea benthic foraminifera from the Sulu Sea[J]. Paleoceanography, 1994, 9(1): 87-150.
|
[40] |
Jorissen F J, Wittling I, Peypouquet J P, et al.Live benthic foraminiferal faunas off Cape Blanc, NW-Africa: Community structure and microhabitats[J]. Deep-Sea Research Part I:Oceanographic Research Papers, 1998, 45(12): 2 157-2 188.
|
[41] |
Schonfeld J.Benthic foraminifera and pore-water oxygen profiles: A re-assessment of species boundary conditions at the western Iberian Margin[J]. Journal of Foraminiferal Research, 2001, 31(2): 86-107.
|
[42] |
Fontanier C, Jorissen F J, Licari L, et al.Live benthic foraminiferal faunas from the Bay of Biscay: Faunal density, composition, and microhabitats[J]. Deep-Sea Research Part I:Oceanographic Research Papers, 2002, 49(4): 751-785.
|
[43] |
Fontanier C, Jorissen F J, Chaillou G, et al.Seasonal and interannual variability of benthic foraminiferal faunas at 550 m depth in the Bay of Biscay[J]. Deep-Sea Research Part I:Oceanographic Research Papers, 2003, 50(4): 457-494.
|
[44] |
Fontanier C, Jorissen F J, Chaillou G, et al.Live foraminiferal faunas from a 2800 m deep lower canyon station from the Bay of Biscay: Faunal response to focusing of refractory organic matter[J]. Deep-Sea Research Part I:Oceanographic Research Papers, 2005, 52(7): 1 189-1 227.
|
[45] |
Koho K A, Kouwenhoven J, de Stigter H C, et al. Benthic foraminifera in the Nazare Canyon, Portuguese continental margin: Sedimentary environments and disturbance[J]. Marine Micropaleontology, 2007, 66(1): 27-51.
|
[46] |
Koho K A, García R, de Stigter H C, et al. Sedimentary labile organic carbon and pore water redox control on species distribution of benthic foraminifera: A case study from Lisbon-Setúbal Canyon (southern Portugal)[J]. Progress in Oceanography, 2008, 79(1): 55-82.
|
[47] |
Schulz H N, Brinkhoff T, Ferdelman T G, et al.Dense populations of a giant sulfur bacterium in Namibian shelf sediments[J]. Science, 1999, 284(5 413): 493-495.
|
[48] |
Hogslund S, Nielsen J L, Nielsen L P.Distribution, ecology and molecular identification of Thioploca from Danish brackish water sediments[J]. FEMS Microbiology Ecology, 2010, 73(1): 110-120.
|
[49] |
Groffman P M, Altabet M A, Bohlke J K, et al.Methods for measuring denitrification: Diverse approaches to a difficult problem[J]. Ecological Applications, 2006, 16(6): 2 091-2 122.
|
[50] |
Strohm T O, Griffin B, Zumft W G, et al.Growth yields in bacterial denitrification and nitrate ammonification[J]. Applied and Environmental Microbiology, 2007, 73(5): 1 420-1 424.
|
[51] |
Koho K A, Kouwenhoven T J, de Stigter H C, et al. Benthic foraminifera in the Nazaré Canyon, Portuguese continental margin: Sedimentary environments and disturbance[J]. Marine Micropaleontology, 2007, 66(1): 27-51.
|
[52] |
Dale A W, Sommer S, Lomnitz U, et al.Biological nitrate transport in sediments on the Peruvian margin mitigates benthic sulfide emissions and drives pelagic N loss during stagnation events[J]. Deep-Sea Research Part I: Oceanographic Research Papers, 2016, 112: 123-136.
|
[53] |
Bernhard J M.Potential symbionts in bathyal foraminifera[J]. Science, 2003, 299(5 608): 861.
|
[54] |
Bernhard J M, Goldstein S T, Bowser S S.An ectobiont-bearing foraminiferan, Bolivina pacifica, that inhabits microxic pore waters: Cell-biological and paleoceanographic insights[J]. Environmental Microbiology, 2010, 12(8): 2 107-2 119.
|
[55] |
Tsuchiya M, Toyofuku T, Uematsu K, et al.Cytologic and genetic characteristics of endobiotic bacteria and kleptoplasts of Virgulinella fragilis (Foraminifera)[J]. Journal of Eukaryotic Microbiology, 2015, 62(4): 454-469.
|
[56] |
Bernhard J M, Bowser S S.Peroxisome proliferation in foraminifera inhabiting the chemocline: An adaptation to reactive oxygen species exposure?[J]. Journal of Eukaryotic Microbiology, 2008, 55(3): 135-144.
|
[57] |
Leutenegger S, Hansen H J.Ultrastructural and radiotracer studies of pore function in foraminifera[J]. Marine Biology, 1979, 54(1): 11-16.
|
[58] |
Corliss B H.Microhabitats of benthic foraminifera within deep-sea sediments[J]. Nature, 1985, 314(6 010): 435-438.
|
[59] |
Tielens A G M, Rotte C, Hellemond J J V, et al. Mitochondria as we don’t know them[J]. Trends in Biochemical Sciences, 2002, 27(11): 564-572.
|
[60] |
Joe G, Schofield O M, Falkowski P G, et al.The function of plastids in the deep-sea benthic foraminifer, Nonionella stella. Limnol Oceanogr[J]. Limnology & Oceanography, 2002, 47(6): 1 569-1 580.
|
[61] |
Kuhnt T, Friedrich O, Schmiedl G, et al.Relationship between pore density in benthic foraminifera and bottom-water oxygen content[J]. Deep-Sea Research Part I: Oceanographic Research Papers, 2013, 76: 85-95.
|
[62] |
Glock N, Eisenhauer A, Milker Y, et al.Environmental influences on the pore density of Bolivina Spissa (Cushman)[J]. Journal of Foraminiferal Research, 2011, 41(1): 22-32.
|
[63] |
Nomaki H, Bernhard J M, Ishida A, et al.Intracellular isotope localization in Ammonia sp. (Foraminifera) of oxygen-depleted environments: Results of nitrate and sulfate labeling experiments[J]. Frontiers in Microbiology, 2016, 7: 163.
|
[64] |
Zhao Feng, Xu Kuidong.Advances in the diversity of microbial eukaryotes in deep sea[J]. Advances in Earth Science, 2014, 29(5):551-558.
|
|
[赵峰, 徐奎栋. 深海真核微生物多样性研究进展[J]. 地球科学进展, 2014, 29(5): 551-558.]
|