With the increasing difficulty of finding the shallow surface deposit and the increasing depth of resources exploration, three-dimensional modeling technology is more apparent in deep prospecting, and its accuracy directly determines the cognitive degree of geological body and metallogenic condition. For this, we put forward a set of the extraction technology of abnormal information combined with aeromagnetic data processing with three-dimensional geological modeling. Inversing the selected profile of the study area and obtaining each profile geological model, we built three-dimensional geological model of geological units by the method of profile linked, using undulating terrain three-dimensional block magnetic field forward techniques to model the three-dimensional geological model of the whole area, and obtained the forward modeling results of the whole three-dimensional geological model and the geological unit. After the comparative analysis with the test result, adding reasonable geological constraints and revising model, through adjusting for many times, we made the model maximum close to the actual situation. The model can well reflect the geological information and make minimum fitting error of observations and theoretical field, with which geologists can use the most of their experience and get more regional geological understanding. Using the thought of main block and secondary block to subdivision modeling of geological body, on the condition of ensuring the accuracy of model, the number of the total model block decreased and the multi-window and multi-geological body parallel computing method were used to improve the modeling speed, effectively solve the limitation problem of the model complexity in the process of the three-dimensional inversion modeling method, and easily form complex and different sizes three-dimensional geological model. We applied this method to the Hubei Daye area, constructed the three-dimensional geological model of Daye Iron Mine, and verified the feasibility and rationality of this method.